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Softwares

Open-source softwares I have led across research projects.

📄 LongBEL

Code • Models • Article

LongBEL (Long-Context and Document-Consistent Biomedical Entity Linking) is a generative framework for biomedical entity linking that uses document context and memory of previous normalizations to improve entity disambiguation and ensure consistent predictions across a document.

🤖 SynCABEL

Code • Models • Datasets • Article • Poster

SynCABEL (Synthetic Contextualized Augmentation for Biomedical Entity Linking) is a novel method that enhances biomedical entity linking (BEL) by using LLM-generated contextual sentences to augment training data for context-aware BEL models.

🧪 BioMedics

Code • Article • Poster

BioMedics is an NLP system that transforms unstructured French clinical notes into structured data. It performs named entity recognition, qualification, and entity linking for drugs and laboratory tests.

⏱️ EDS-TeVa

Code • Article

EDS-TeVa provides a set of tools that aims at modeling the adoption over time and across space of the Electronic Health Records.